PuBlications
Primary authorship shared by lab members
2022
Antigen coverage presented by MHC class I has a negative correlation with SARS-CoV-2-induced mortality
Ji Soo Park and Kwoneel Kim
Vaccines 10, 1917 (2022)
Gene essentiality for tumor growth influences neoantigen-directed immunoediting
Hyoeun Bang, Jae Soon Park, Jeong Yeon Kim, Changhwan Sung, Jinhyeon An, Dae-Yeon Cho, Se-Hoon Lee, Seok Bo Shim, Jung Kyoon Choi, Kwoneel Kim
Clinical and Translational Medicine 12, e714 (2022)
2021
Recurrence-associated gene signature in patients with stage I non-small-cell lung cancer
Su Han Cho*, Shinkyo Yoon*, Dae Ho Lee, Sang-We Kim, Kwoneel Kim
Scientific Reports 11, 19596 (2021)
Integrative multi-omics approach for mechanism of humidifier disinfectant-associated lung injury
Jeong-Hyun Kim*, Kwoneel Kim*, Jeonghun Yeom*, Eun Lee, Mi-Jin Kang, Seung-Hwa Lee, Kyunggon Kim, So-Yeon Lee, Sang-Bum Hong, Dong Kyu Oh, Kyuhong Lee, Seong-Jin Choi, Mi-
Jin Yang, Jiyeon Kim, Soo-Jong Hong
Clinical and Translational Medicine 11, e562 (2021)
Longitudinal change of genetic variations in cetuximab-treated metastatic colorectal cancer
Sun Young Kim*, Kwoneel Kim*, Su Han Cho, Sung-Min Chun, Eunyoung Tak, Yong Sang Hong, Jeong Eun Kim, Tae Won Kim
Cancer Genetics 258-259, 27-36 (2021)
DNA methylation and gene expression patterns are widely altered in fetal growth restriction and associated with FGR development
Seoyeong Lee, Young Nam Kim, DoHwa Im, Su Han Cho, Jiyeon Kim, Jeong-Hyun Kim, Kwoneel Kim
Animal Cells and Systems 25, 128-135 (2021)
2020
Accelerated evolution of the regulatory sequences of brain development in the human genome
Kang Seon Lee, Hyoeun Bang, Jung Kyoon Choi, Kwoneel Kim
Molecules and Cells 43, 331-339 (2020)
How to interpret and integrate multi-omics data at systems level
Gun Tae Jung, Kwang-Pyo Kim, Kwoneel Kim
Animal Cells and Systems 24, 1-7 (2020)
Predicting clinical benefit of immunotherapy by antigenic or functional mutations affecting tumour immunogenicity
Kwoneel Kim, Hong Sook Kim, Jeong Yeon Kim, Hyunchul Jung, Jong-Mu Sun, Jin Seok Ahn, Myung-Ju Ahn, Keunchil Park, Se-Hoon Lee, Jung Kyoon Choi
Nature Communications 11, 951 (2020)
2017
Network perturbation by recurrent regulatory variants in cancer
Kiwon Jang*, Kwoneel Kim*, Ara Cho, Insuk Lee, Jung Kyoon Choi
PLoS Computional Biology 13, e1005449 (2017)
2016
Chromatin structure-based prediction of recurring noncoding mutations in cancer
Kwoneel Kim, Kiwon Jang, Woojin Yang, Eun-Young Choi, Seong-Min Park, Mingyun Bae, Youn-Jae Kim & Jung Kyoon Choi
Nature Genetics 48, 1321-1326 (2016)
Intersection of genetics and epigenetics in monozygotic twin genomes
Kwoneel Kim, Kibaick Lee, Hyoeun Bang, Jeong Yeon Kim, Jung Kyoon Choi
Methods 103, 50-56 (2016)
2015
Global transcription network incorporating distal regulator binding reveals selective cooperation of cancer drivers and risk genes
Kwoneel Kim, Woojin Yang, Kang Seon Lee, Hyoeun Bang, Kiwon Jang, Sang Cheol Kim, Jin Ok Yang, Seongjin Park, Kiejung Park and Jung Kyoon Choi
Nucleic Acids Research 43, 5716-5729 (2015)
Genetic architecture of transcription and chromatin regulation
Kwoneel Kim, Hyoeun Bang, Kibaick Lee, Jung Kyoon Choi
Genomics & Informatics 13, 40-44 (2015)
2014
Genetic factors underlying discordance in chromatin accessibility between monozygotic twins
Kwoneel Kim, Hyo-Jeong Ban, Jungmin Seo, Kibaick Lee, Maryam Yavartanoo, Sang Cheol Kim, Kiejung Park, Seong Beom Cho and Jung Kyoon Choi
Genome Biology 15, R72 (2014)
Collagen Triple Helix Repeat Containing 1 (CTHRC1) acts via ERK-dependent induction of MMP9 to promote invasion of colorectal cancer cells
Hee Cheol Kim, Yong Sung Kim, Hyun-Woo Oh, Kwoneel Kim, Sang-Seok Oh, Jong-Tae Kim, Bo Yeon Kim, Seon-Jin Lee, Yong-Kyung Choe, Dong Hyeok Kim, Seok-Hyung Kim, Seoung Wan Chae, Kwang Dong Kim, and Hee Gu Lee
Oncotarget 5, 519-529 (2014)
2013
Genome-wide reorganization of histone H2AX toward particular fragile sites on cell activation
Jungmin Seo, Kwoneel Kim, Dong-Yeop Chang, Ho-Bum Kang, Eui-Cheol Shin, Jongbum Kwon and Jung Kyoon Choi
Nucleic Acids Research 42, 1016-1025 (2013)
Regulation of the boundaries of accessible chromatin
Xiaoran Chai, Sanjanaa Nagarajan, Kwoneel Kim, Kibaick Lee, Jung Kyoon Choi
PLoS Genetics 9, e1003778 (2013)
Genetic landscape of open chromatin in yeast
Kibaick Lee, Sang Cheol Kim, Inkyung Jung, Kwoneel Kim, Jungmin Seo, Heun-Sik Lee, Gireesh K. Bogu, Dongsup Kim, Sanghyuk Lee, Byungwook Lee, Jung Kyoon Choi
PLoS Genetics 9, e1003229 (2013)
2011
Epigenetic regulation of microRNA-10b and targeting of oncogenic MAPRE1 in gastric cancer
Kwoneel Kim, Han-Chul Lee, Jong-Lyul Park, Mirang Kim, Seon-Young Kim, Seung-Moo Noh, Kyu-Sang Song, Jin Cheon Kim and Yong Sung Kim
Epigenetics 6, 740-751 (2011)